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After noticing I had added a model tag to the incorrect vocabulary, I selected the checkbox next to the entry and then clicked the delete button. The entry disappeared so I then selected Save and Close thinking that it was gone. However when trying to add some tags to entities I had created it was still in the Vocabulary list under the Application Vocabulary. It was also in the second Vocabulary that it was supposed to be in.
I went back in to the Application Vocabulary and the entry I had deleted was still there. I am using version 184.108.40.206, any ideas?