4 Replies Latest reply on Nov 18, 2015 3:30 PM by aanjan RSS
    smishra Newbie

    Problem while installing ThingWorx for the first time

    Seeing following error in Tomcat stderr log file (tomcat8-stderr.2015-11-18.log) while trying to bring up Tomcat app after deployment. Looks like something to do with datastore. Any idea what I may be doing wrong?

     

    18-Nov-2015 07:47:32.618 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8070"]

    18-Nov-2015 07:47:32.623 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-7009"]

    18-Nov-2015 07:47:32.624 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in 2217 ms

    18-Nov-2015 09:00:03.620 INFO [http-nio-8070-exec-5] org.apache.catalina.core.StandardContext.reload Reloading Context with name [/Thingworx] has started

    18-Nov-2015 09:00:03.651 SEVERE [http-nio-8070-exec-5] org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks The web application [Thingworx] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@231d3916]) and a value of type [java.util.Stack] (value [[SuperUser:User]]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

    18-Nov-2015 09:00:05.117 INFO [http-nio-8070-exec-5] org.apache.catalina.core.StandardContext.reload Reloading Context with name [/Thingworx] is completed

    ource@361fb98f' was successfully initialized, but failed to start. Please see attached cause exception.

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:513)

    at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)

    at org.neo4j.kernel.impl.transaction.XaDataSourceManager.start(XaDataSourceManager.java:164)

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507)

    ... 22 more

    Caused by: org.neo4j.kernel.impl.storemigration.StoreUpgrader$UpgradingStoreVersionNotFoundException: 'neostore.nodestore.db' does not contain a store version, please ensure that the original database was shut down in a clean state.

    at org.neo4j.kernel.impl.storemigration.UpgradableDatabase.checkUpgradeable(UpgradableDatabase.java:78)

    at org.neo4j.kernel.impl.storemigration.StoreMigrator.needsMigration(StoreMigrator.java:135)

    at org.neo4j.kernel.impl.storemigration.StoreUpgrader.getParticipantsEagerToMigrate(StoreUpgrader.java:268)

    at org.neo4j.kernel.impl.storemigration.StoreUpgrader.migrateIfNeeded(StoreUpgrader.java:143)

    at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.start(NeoStoreXaDataSource.java:344)

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507)

    ... 25 more

    org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager@6f8bb78d' was successfully initialized, but failed to start. Please see attached cause exception.

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:513)

    at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)

    at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:343)

    at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:59)

    at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:91)

    at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:181)

    at com.thingworx.system.GraphDatabaseServiceManager.initializeGraphDatabaseService(GraphDatabaseServiceManager.java:226)

    at com.thingworx.system.GraphDatabaseServiceManager.initializeGraphDatabaseServiceManager(GraphDatabaseServiceManager.java:139)

    at com.thingworx.system.GraphDatabaseServiceManager.getInstance(GraphDatabaseServiceManager.java:164)

    at com.thingworx.system.ThingWorxBootstrapper.contextInitialized(ThingWorxBootstrapper.java:90)

    at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4738)

    at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5181)

    at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)

    at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:725)

    at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:701)

    at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)

    at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:945)

    at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1798)

    at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)

    at java.util.concurrent.FutureTask.run(Unknown Source)

    at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)

    at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)

    at java.lang.Thread.run(Unknown Source)

    Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource@361fb98f' was successfully initialized, but failed to start. Please see attached cause exception.

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:513)

    at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)

    at org.neo4j.kernel.impl.transaction.XaDataSourceManager.start(XaDataSourceManager.java:164)

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507)

    ... 22 more

    Caused by: org.neo4j.kernel.impl.storemigration.StoreUpgrader$UpgradingStoreVersionNotFoundException: 'neostore.nodestore.db' does not contain a store version, please ensure that the original database was shut down in a clean state.

    at org.neo4j.kernel.impl.storemigration.UpgradableDatabase.checkUpgradeable(UpgradableDatabase.java:78)

    at org.neo4j.kernel.impl.storemigration.StoreMigrator.needsMigration(StoreMigrator.java:135)

    at org.neo4j.kernel.impl.storemigration.StoreUpgrader.getParticipantsEagerToMigrate(StoreUpgrader.java:268)

    at org.neo4j.kernel.impl.storemigration.StoreUpgrader.migrateIfNeeded(StoreUpgrader.java:143)

    at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.start(NeoStoreXaDataSource.java:344)

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507)

    ... 25 more

    java.lang.RuntimeException: Error starting org.neo4j.kernel.EmbeddedGraphDatabase, D:\ThingworxStorage\database\.\data

    at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:366)

    at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:59)

    at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:91)

    at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:181)

    at com.thingworx.system.GraphDatabaseServiceManager.initializeGraphDatabaseService(GraphDatabaseServiceManager.java:226)

    at com.thingworx.system.GraphDatabaseServiceManager.initializeGraphDatabaseServiceManager(GraphDatabaseServiceManager.java:139)

    at com.thingworx.system.GraphDatabaseServiceManager.getInstance(GraphDatabaseServiceManager.java:164)

    at com.thingworx.system.ThingWorxBootstrapper.contextInitialized(ThingWorxBootstrapper.java:90)

    at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4738)

    at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5181)

    at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)

    at org.apache.catalina.core.StandardContext.reload(StandardContext.java:3755)

    at org.apache.catalina.manager.ManagerServlet.reload(ManagerServlet.java:1006)

    at org.apache.catalina.manager.HTMLManagerServlet.reload(HTMLManagerServlet.java:614)

    at org.apache.catalina.manager.HTMLManagerServlet.doPost(HTMLManagerServlet.java:215)

    at javax.servlet.http.HttpServlet.service(HttpServlet.java:648)

    at javax.servlet.http.HttpServlet.service(HttpServlet.java:729)

    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:291)

    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)

    at org.apache.catalina.filters.CsrfPreventionFilter.doFilter(CsrfPreventionFilter.java:213)

    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)

    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)

    at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)

    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)

    at org.apache.catalina.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:108)

    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)

    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)

    at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:217)

    at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106)

    at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:614)

    at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142)

    at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)

    at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:616)

    at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)

    at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518)

    at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091)

    at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:673)

    at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1500)

    at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1456)

    at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)

    at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)

    at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)

    at java.lang.Thread.run(Unknown Source)

    Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager@3108366d' was successfully initialized, but failed to start. Please see attached cause exception.

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:513)

    at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)

    at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:343)

    ... 43 more

    Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource@1119a6b1' was successfully initialized, but failed to start. Please see attached cause exception.

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:513)

    at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)

    at org.neo4j.kernel.impl.transaction.XaDataSourceManager.start(XaDataSourceManager.java:164)

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507)

    ... 45 more

    Caused by: org.neo4j.kernel.impl.storemigration.StoreUpgrader$UpgradingStoreVersionNotFoundException: 'neostore.nodestore.db' does not contain a store version, please ensure that the original database was shut down in a clean state.

    at org.neo4j.kernel.impl.storemigration.UpgradableDatabase.checkUpgradeable(UpgradableDatabase.java:78)

    at org.neo4j.kernel.impl.storemigration.StoreMigrator.needsMigration(StoreMigrator.java:135)

    at org.neo4j.kernel.impl.storemigration.StoreUpgrader.getParticipantsEagerToMigrate(StoreUpgrader.java:268)

    at org.neo4j.kernel.impl.storemigration.StoreUpgrader.migrateIfNeeded(StoreUpgrader.java:143)

    at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.start(NeoStoreXaDataSource.java:344)

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507)

    ... 48 more

    org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.transaction.XaDataSourceManager@3108366d' was successfully initialized, but failed to start. Please see attached cause exception.

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:513)

    at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)

    at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:343)

    at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:59)

    at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:91)

    at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:181)

    at com.thingworx.system.GraphDatabaseServiceManager.initializeGraphDatabaseService(GraphDatabaseServiceManager.java:226)

    at com.thingworx.system.GraphDatabaseServiceManager.initializeGraphDatabaseServiceManager(GraphDatabaseServiceManager.java:139)

    at com.thingworx.system.GraphDatabaseServiceManager.getInstance(GraphDatabaseServiceManager.java:164)

    at com.thingworx.system.ThingWorxBootstrapper.contextInitialized(ThingWorxBootstrapper.java:90)

    at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4738)

    at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5181)

    at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)

    at org.apache.catalina.core.StandardContext.reload(StandardContext.java:3755)

    at org.apache.catalina.manager.ManagerServlet.reload(ManagerServlet.java:1006)

    at org.apache.catalina.manager.HTMLManagerServlet.reload(HTMLManagerServlet.java:614)

    at org.apache.catalina.manager.HTMLManagerServlet.doPost(HTMLManagerServlet.java:215)

    at javax.servlet.http.HttpServlet.service(HttpServlet.java:648)

    at javax.servlet.http.HttpServlet.service(HttpServlet.java:729)

    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:291)

    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)

    at org.apache.catalina.filters.CsrfPreventionFilter.doFilter(CsrfPreventionFilter.java:213)

    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)

    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)

    at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)

    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)

    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)

    at org.apache.catalina.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:108)

    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:239)

    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)

    at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:217)

    at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106)

    at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:614)

    at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:142)

    at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)

    at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:616)

    at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)

    at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:518)

    at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1091)

    at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:673)

    at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1500)

    at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1456)

    at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)

    at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)

    at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)

    at java.lang.Thread.run(Unknown Source)

    Caused by: org.neo4j.kernel.lifecycle.LifecycleException: Component 'org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource@1119a6b1' was successfully initialized, but failed to start. Please see attached cause exception.

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:513)

    at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:115)

    at org.neo4j.kernel.impl.transaction.XaDataSourceManager.start(XaDataSourceManager.java:164)

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507)

    ... 45 more

    Caused by: org.neo4j.kernel.impl.storemigration.StoreUpgrader$UpgradingStoreVersionNotFoundException: 'neostore.nodestore.db' does not contain a store version, please ensure that the original database was shut down in a clean state.

    at org.neo4j.kernel.impl.storemigration.UpgradableDatabase.checkUpgradeable(UpgradableDatabase.java:78)

    at org.neo4j.kernel.impl.storemigration.StoreMigrator.needsMigration(StoreMigrator.java:135)

    at org.neo4j.kernel.impl.storemigration.StoreUpgrader.getParticipantsEagerToMigrate(StoreUpgrader.java:268)

    at org.neo4j.kernel.impl.storemigration.StoreUpgrader.migrateIfNeeded(StoreUpgrader.java:143)

    at org.neo4j.kernel.impl.nioneo.xa.NeoStoreXaDataSource.start(NeoStoreXaDataSource.java:344)

    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.start(LifeSupport.java:507)

    ... 48 more